miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|34722265|gb|CD192335.1|CD192335 CACGATTGGTAATGATCGATTCAAATGTGCAGAAGCTCTTTTCGCAACCTAGCTTTTTGGGAATGGAAGCATCGGGAATT
CATGACACTACATACAATTCGATTATGAAGTGTGATGTGGATATCCGTAAAGATCTGTATTCGAACACCGTGTTGTCTGG
TGGAAGTACGATGTATCCTGGTATTGCTGACCGTATGCAGAAGGAGATTAGTGCTCTAGCCCCCAGTACAATGAAGATAA
AGATCGTTGCACCACCTGAACGGAAGTACTCAGTATGGATTGGTGGTTCTATTTTGGCTTCATTATCAACATTCCAACA




Most similar to sp|Q25010|ACT3A_HELAM

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a OS=Helicoverpa
           armigera GN=actA3a PE=2 SV=1
          Length = 376

 Score =  177 bits (448), Expect(2) = 2e-46
 Identities = 85/91 (93%), Positives = 91/91 (100%)
 Frame = +3

Query: 45  QPSFLGMEASGIHDTTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP 224
           QPSFLGMEA+GIH+TTYNSIMKCDVDIRKDLY+NTVLSGG+TMYPGIADRMQKEI+ALAP
Sbjct: 264 QPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP 323

Query: 225 STMKIKIVAPPERKYSVWIGGSILASLSTFQ 317
           STMKIKI+APPERKYSVWIGGSILASLSTFQ
Sbjct: 324 STMKIKIIAPPERKYSVWIGGSILASLSTFQ 354



 Score = 28.9 bits (63), Expect(2) = 2e-46
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   TIGNDRFKCAEALF 43
           TIGN+RF+C EALF
Sbjct: 250 TIGNERFRCPEALF 263


>sp|P04829|ACT3_BOMMO Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3
          Length = 376

 Score =  175 bits (443), Expect(2) = 6e-46
 Identities = 84/91 (92%), Positives = 90/91 (98%)
 Frame = +3

Query: 45  QPSFLGMEASGIHDTTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP 224
           QPSFLGMEA+GIH+TTYNSIMKCDVDIRKDLY+NTVLSGG+TMYPGIADRMQKEI+ LAP
Sbjct: 264 QPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITRLAP 323

Query: 225 STMKIKIVAPPERKYSVWIGGSILASLSTFQ 317
           STMKIKI+APPERKYSVWIGGSILASLSTFQ
Sbjct: 324 STMKIKIIAPPERKYSVWIGGSILASLSTFQ 354



 Score = 28.9 bits (63), Expect(2) = 6e-46
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 2   TIGNDRFKCAEALF 43
           TIGN+RF+C EALF
Sbjct: 250 TIGNERFRCPEALF 263


>sp|P53470|ACT1_SCHMA Actin-1 OS=Schistosoma mansoni PE=2 SV=1
          Length = 376

 Score =  182 bits (461), Expect = 7e-46
 Identities = 90/91 (98%), Positives = 91/91 (100%)
 Frame = +3

Query: 45  QPSFLGMEASGIHDTTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP 224
           QPSFLGMEASGIH+TTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP
Sbjct: 264 QPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAP 323

Query: 225 STMKIKIVAPPERKYSVWIGGSILASLSTFQ 317
           STMKIKIVAPPERKYSVWIGGSILASLSTFQ
Sbjct: 324 STMKIKIVAPPERKYSVWIGGSILASLSTFQ 354